--- title: "specimen_summary" description: "Summary or persistent information about a single specimen." --- Summary or persistent information about a single specimen. **Purpose.** To record summary or persistent record about the use and storage of a single specimen until final disposition. ## Source | Model | Leg | Role | |---|---|---| | `openEHR-EHR-EVALUATION.specimen_summary.v1` | openEHR | defines this table | ## Columns | Column | Type | Null | Description | Source | |---|---|---|---|---| | `id` | `uuid primary key` | no | Primary key. | — | | `form_id` | `uuid` → [`form`](/docs/tables/form) | no | The form this entry was recorded on. | — | | `form_block_id` | `uuid` | yes | The block within the form, when the entry is bound to one. | — | | `specimen_label` | `text` | yes | Specimen label | `/data[at0001]/items[at0032]` | | `description` | `text` | yes | Description | `/data[at0001]/items[at0031]` | | `stored_specimen_id_value`
`stored_specimen_id_system` | text, text
`text`, `text` | yes | Stored specimen ID | `/data[at0001]/items[at0002]` | | `storage_started` | `timestamptz` | yes | Storage started | `/data[at0001]/items[at0018]` | | `number_remaining` | `integer` | yes | Number remaining | `/data[at0001]/items[at0030]` | | `use_by_date` | `timestamptz` | yes | Use by date | `/data[at0001]/items[at0012]` | | `legally_expiry_date` | `timestamptz` | yes | Legally expiry date | `/data[at0001]/items[at0033]` | | `disposal_reason`
`disposal_reason_code`
`disposal_reason_system`
`disposal_reason_valueset_id` | coded text
`text`, `text`, `text`, `text` | yes | Disposal reason | `/data[at0001]/items[at0010]` | | `date_of_disposal` | `timestamptz` | yes | Date of disposal | `/data[at0001]/items[at0011]` | | `specimen_storage` | `text` | yes | Specimen storage | `/data[at0001]/items[at0020]` | | `comment` | `text` | yes | Comment | `/data[at0001]/items[at0016]` | | `last_updated` | `timestamptz` | yes | Last updated | `/protocol[at0013]/items[at0014]` | ## Constraints ```sql check (stored_specimen_id_system is null or stored_specimen_id_value is not null) check ((disposal_reason_code is null and disposal_reason_system is null and disposal_reason_valueset_id is null) or (disposal_reason is not null and disposal_reason_code is not null and disposal_reason_system is not null and disposal_reason_valueset_id is not null)) ``` ## Unique - `form_block_id` ## References | Columns | Target | On delete | |---|---|---| | `form_id` | [`form`](/docs/tables/form) | cascade | | `form_id, form_block_id` | [`form_block`](/docs/tables/form_block) | cascade | | `disposal_reason_valueset_id, disposal_reason_code, disposal_reason_system, disposal_reason` | [`valueset_code`](/docs/tables/valueset_code) | restrict | ## Referenced by - [`specimen_summary_specimen_details`](/docs/tables/specimen_summary_specimen_details) via `specimen_summary_id` - [`specimen_summary_use`](/docs/tables/specimen_summary_use) via `specimen_summary_id` - [`specimen_summary_biobank_location`](/docs/tables/specimen_summary_biobank_location) via `specimen_summary_id` ## Indexes - `specimen_summary_form_id_idx` on `form_id` ## Child tables 3 tables hang off `specimen_summary`, one row per repetition. ### `specimen_summary_specimen_details` Child table — one row per repetition, deleted with its parent. | Column | Type | Null | Description | Source | |---|---|---|---|---| | `id` | `uuid primary key` | no | Primary key. | — | | `specimen_summary_id` | `uuid` → [`specimen_summary`](/docs/tables/specimen_summary) | no | — | — | | `position` | `integer` | no | Order of this row within its parent, from zero. | — | | `specimen_id` | `uuid` | no | Specimen details | `/data[at0001]/items[at0008]` | #### Unique - `specimen_summary_id, position` - `specimen_summary_id, specimen_id` #### References | Columns | Target | On delete | |---|---|---| | `specimen_summary_id` | [`specimen_summary`](/docs/tables/specimen_summary) | cascade | | `specimen_id` | [`specimen`](/docs/tables/specimen) | no action | #### Indexes - `specimen_summary_specimen_details_specimen_id_idx` on `specimen_id` ### `specimen_summary_use` Child table — one row per repetition, deleted with its parent. | Column | Type | Null | Description | Source | |---|---|---|---|---| | `id` | `uuid primary key` | no | Primary key. | — | | `specimen_summary_id` | `uuid` → [`specimen_summary`](/docs/tables/specimen_summary) | no | — | — | | `position` | `integer` | no | Order of this row within its parent, from zero. | — | | `reason_for_use`
`reason_for_use_code`
`reason_for_use_system`
`reason_for_use_valueset_id` | coded text
`text`, `text`, `text`, `text` | yes | Reason for use | `/data[at0001]/items[at0022]/items[at0023]` | | `date_of_use` | `text` | yes | Date of use | `/data[at0001]/items[at0022]/items[at0024]` | | `number_used` | `integer` | yes | Number used | `/data[at0001]/items[at0022]/items[at0029]` | | `use_comment` | `text` | yes | Use comment | `/data[at0001]/items[at0022]/items[at0027]` | #### Constraints ```sql check ((reason_for_use_code is null and reason_for_use_system is null and reason_for_use_valueset_id is null) or (reason_for_use is not null and reason_for_use_code is not null and reason_for_use_system is not null and reason_for_use_valueset_id is not null)) ``` #### Unique - `specimen_summary_id, position` #### References | Columns | Target | On delete | |---|---|---| | `specimen_summary_id` | [`specimen_summary`](/docs/tables/specimen_summary) | cascade | | `reason_for_use_valueset_id, reason_for_use_code, reason_for_use_system, reason_for_use` | [`valueset_code`](/docs/tables/valueset_code) | restrict | ### `specimen_summary_biobank_location` Child table — one row per repetition, deleted with its parent. | Column | Type | Null | Description | Source | |---|---|---|---|---| | `id` | `uuid primary key` | no | Primary key. | — | | `specimen_summary_id` | `uuid` → [`specimen_summary`](/docs/tables/specimen_summary) | no | — | — | | `position` | `integer` | no | Order of this row within its parent, from zero. | — | | `organization_id` | `uuid` | no | Biobank location | `/data[at0001]/items[at0009]` | #### Unique - `specimen_summary_id, position` - `specimen_summary_id, organization_id` #### References | Columns | Target | On delete | |---|---|---| | `specimen_summary_id` | [`specimen_summary`](/docs/tables/specimen_summary) | cascade | | `organization_id` | [`organization`](/docs/tables/organization) | no action | #### Indexes - `specimen_summary_biobank_location_organization_id_idx` on `organization_id`